PROTİSTLERİN EKOSİSTEM MÜHENDİSLİĞİ: MİKRO DÜNYANIN MAKRO ETKİLERİ
Keywords:
protistler, ökaryotik mikroorganizmalar, ekosistem mühendisliği, mikrohabitat, ekosistem işlevleriAbstract
Tek hücreli ökaryotlar, birçok mikrobiyal ekosistemin ayrılmaz bir parçası olup yüksek tür çeşitliliği ve ekolojik karmaşıklığa sahiptir. Bu durum, protistlerin ekosistemdeki çok yönlü rollerini anlamayı zorunlu kılmaktadır. Ekosistem mühendisleri, fiziksel çevreyi doğrudan ya da dolaylı biçimde değiştiren türler olarak tanımlanır ve protistlerin bu çerçevede değerlendirilmesi giderek daha fazla önem kazanmaktadır. Protistlerin popülasyon dinamiklerini düzenlemeleri, organik maddenin parçalanması ve remineralizasyon süreçlerinde rol almaları, besin ağlarının sürekliliğini desteklemeleri ve mikrohabitat çeşitliliği ile biyoçeşitliliği artırmaları, ekosistem mühendisliği açısından dikkate değer özelliklerdir. Mikrobiyal ölçekte gerçekleşen bu etkiler, protistlerin yalnızca tüketici olarak değil, aynı zamanda mikrohabitatları dönüştüren ekosistem mühendisleri olarak görülmesini gerektirmektedir. Bu nedenle, ekosistem işlevlerini daha iyi anlaşılması ve koruma stratejilerini dahil etmek için kapsamlı bilimsel araştırmalar büyük önem taşımaktadır.
References
[1] Wright, J. P., Jones, C. G., Flecker, A. S. (2002): An ecosystem engineer, the beaver, increases species richness at the landscape scale. Oecologia, 132: 96–101.
[2] Cuddington, K., Hastings, A. (2004): Invasive engineers. Ecological Modelling, 178: 335–347.
[3] Jones, C. G., Lawton, J. H., Shachak, M. (1994): Organisms as ecosystem engineers. Oikos, 69.
[4] Jones, C. G., Lawton, J. H., Shachak, M. (1997): Positive and negative effects of organisms as physical ecosystem engineers. Ecology, 78: 1946–1957.
[5] Blouin, M., Hodson, M. E., Delgado, E. A., Baker, G., Brussaard, L., et al. (2013): A review of earthworm impact on soil function and ecosystem services. European Journal of Soil Science, 64: 161–182.
[6] Kumar, R., Yadav, R., Gupta, R. K., Yodha, K., Kataria, S. K., et al. (2023): The earthworms: Charles Darwin’s ecosystem Engineer. In K. R. Hakeem, W. J. Grichar (ed.), Organic fertilizers-New advances and applications. IntechOpen, London.
[7] Pringle, R. M. (2008): Elephants as agents of habitat creation for small vertebrates at the patch scale. Ecology, 89: 26–33.
[8] Türkmen, C., Temel, E., Sinecen, M. (2013): Effect of some waste and soil regulators on worm behavior in soil. COMU Journal of Agriculture Faculty, 1: 79–86.
[9] Twilley, R. R., Chen, R. H., Hargis, T. (1992): Carbon sinks in mangroves and their implications to carbon budget of tropical coastal ecosystems. Water, Air & Soil Pollution, 64: 265–288.
[10] Moberg, F., Folke, C. (1999): Ecological goods and services of coral reef ecosystems. Ecological Economics, 29: 215–233.
[11] Brown, J. H. (1995): Organisms as engineers: a useful framework for studying effects on ecosystems? Trends in Ecology & Evolution, 10: 51–52.
[12] Pickett, S. T. A., Cadenasson, M. L., Jones, C. G. (2000): Generation of heterogeneity by organisms: creation, maintenance, and trans-formation. In M. J. Hutchings, E. A. John, A. J. A. Stewart (ed.), Ecological consequences of habitat heterogeneity. Blackwell, New York.
[13] Breitburg, D. L., Crump, B. C., Dabiri, J. O., Gallegos, C. L. (2010): Ecosystem engineers in the pelagic realm: alteration of habitat by species ranging from microbes to jellyfish. Integrative and Comparative Biology, 50: 188–200.
[14] Ponge, J. F. (2021): Communities, ecosystem engineers, and functional domains. Ecological Research, 36: 766–777.
[15] Romero, G. Q., Goncalves-Souza, T., Vieira, C., Koricheva, J. (2015): Ecosystem engineering effects on species diversity across ecosystems: a meta-analysis. Biological Reviews, 90: 877–90.
[16] Hammond, M., Bond, T., Prince, J., Hovey, R. K., McLean, D. L. (2020): An assessment of change to fish and benthic communities following installation of an artificial reef. Regional Studies in Marine Science, 39.
[17] Marenco, K. N., Bottjer, D. J. (2007): Ecosystem engineering in the fossil record: early examples from the Cambrian period. Theoretical Ecology Series, 4: 163–184.
[18] Byers, J. E., Cuddington, K., Jones, C. G., Talley, T. S., Hastings, A., et al. (2006): Using ecosystem engineers to restore ecological systems. Trends in Ecology & Evolution, 21: 493–500.
[19] Ellison, A. M., Bank, M. S., Clinton, B. D., Colburn, E. A., Elliott, K., et al. (2005): Loss of foundation species: consequences for the structure and dynamics of forested ecosystems. Frontiers in Ecology and the Environment, 3: 479–486.
[20] Briones, M. J. I. (2024): Special feature on ecosystem engineers: Cross‐scale and cross‐system perspectives. Functional Ecology, 38: 4–7.
[21] Reichman, O. J., Seabloom, E. W. (2002): The role of pocket gophers as subterranean ecosystem engineers. Trends in Ecology & Evolution, 17: 44–49.
[22] Wright, J. P., Jones, C. G. (2006): The Concept of Organisms as Ecosystem Engineers Ten Years On: Progress, Limitations, and Challenges. BioScience, 56.
[23] Hastings, A., Byers, J. E., Crooks, J. A., Cuddington, K., Jones, C. G., et al. (2007): Ecosystem engineering in space and time. Ecology Letters, 10: 153–164.
[24] Begon, M., Townsend, C. R., Harper, J. L. (2006): Ecology: from individuals to ecosystems. Wiley, New York.
[25] Byers, J. E. (2022): Using ecosystem engineers to enhance multiple ecosystem processes. Functional Ecology, 38: 22–36.
[26] Berke, S. K. (2010): Functional groups of ecosystem engineers: a proposed classification with comments on current issues. Integrative and Comparative Biology, 50: 147–57.
[27] Wetzel, R. G. (2001): Protists: Key ecosystem regulators. BioScience, 51.
[28] Corliss, J. O. (2002): Biodiversitiy and biocomplexity of the protists and an overview of their significant roles in maintenance of our biosph. Acta Protozoologica, 41: 199–219.
[29] Caron, D. A., Worden, A. Z., Countway, P. D., Demir, E., Heidelberg, K. B. (2009): Protists are microbes too: a perspective. The ISME Journal, 3: 4–12.
[30] Perrin, A. J., Dorrell, R. G. (2024): Protists and protistology in the Anthropocene: challenges for a climate and ecological crisis. BMC Biology, 22: 279.
[31] Adl, S. M., Simpson, A. G., Lane, C. E., Lukes, J., Bass, D., et al. (2012): The revised classification of eukaryotes. Journal of Eukaryotic Microbiology, 59: 429–493.
[32] Adl, S. M., Bass, D., Lane, C. E., Lukes, J., Schoch, C. L., et al. (2019): Revisions to the classification, nomenclature, and diversity of eukaryotes. Journal of Eukaryotic Microbiology, 66: 4–119.
[33] Gooday, A. J., Schoenle, A., Dolan, J. R., Arndt, H. (2020): Protist diversity and function in the dark ocean - challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists. European Journal of Protistology, 75: 125721.
[34] Schoenle, A., Hohlfeld, M., Hermanns, K., Mahe, F., de Vargas, C., et al. (2021): High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans. Communications Biology, 4: 501.
[35] Danovaro, R., Levin, L. A., Fanelli, G., Scenna, L., Corinaldesi, C. (2024): Microbes as marine habitat formers and ecosystem engineers. Nature Ecology and Evolution, 8: 1407–1419.
[36] Genitsaris, S., Kormas, K. A., Christaki, U., Monchy, S., Moustaka-Gouni, M. (2014): Molecular diversity reveals previously undetected air-dispersed protist colonists in a Mediterranean area. Science of the Total Environment, 478: 70–9.
[37] Edgcomb, V. P., Bernhard, J. M. (2013): Heterotrophic protists in hypersaline microbial mats and deep hypersaline basin water columns. Life (Basel), 3: 346–62.
[38] Worden, A. Z., Follows, M. J., Giovannoni, S. J., Wilken, S., Zimmerman, A. E., et al. (2015): Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes. Science, 347: 1257594.
[39] Agatha, S., Spindler, M., Wilbert, N. (1993): Ciliated protozoa (Ciliophora) from Arctic sea ice. Acta Protozoologica, 32: 261–268.
[40] Poulin, M., Daugbjerg, N., Gradinger, R., Ilyash, L., Ratkova, T., et al. (2011): The pan-Arctic biodiversity of marine pelagic and sea-ice unicellular eukaryotes: a first-attempt assessment. Marine Biodiversity, 41: 13–28.
[41] Thompson, A. R. (2021): Phagotrophic protists (protozoa) in Antarctic terrestrial ecosystems: diversity, distribution, ecology, and best research practices. Polar Biology, 44: 1467–1484.
[42] Geisen, S., Mitchell, E. A. D., Wilkinson, D. M., Adl, S., Bonkowski, M., et al. (2017): Soil protistology rebooted: 30 fundamental questions to start with. Soil Biology and Biochemistry, 111: 94–103.
[43] Campbell, N. A., Reece, J. B., Urry, L. A., Cain, M. L., Wasserman, S. A., et al. (2008): Biology. Pearson Benjamin Cummings.
[44] Caron, D. A., Hu, S. K. (2019): Are we overestimating protistan diversity in nature? Trends in Microbiology, 27: 197–205.
[45] Cruaud, P., Vigneron, A., Fradette, M. S., Dorea, C. C., Culley, A. I., et al. (2019): Annual protist community dynamics in a freshwater ecosystem undergoing contrasted climatic conditions: The Saint-Charles River (Canada). Frontiers in Microbiology 10: 2359.
[46] Lara, E., Acosta-Mercado, D. (2012): A molecular perspective on ciliates as soil bioindicators. European Journal of Soil Biology, 49: 107–111.
[47] Kazmi, S. S. U. H., Xu, U. H. (2022): A new approach to evaluating water quality status using protozoan periphytons in marine ecosystems: functional units. Ecohydrology & Hydrobiology, 22: 496–504.
[48] Battin, T. J., Sloan, W. T., Kjelleberg, S., Daims, H., Head, I. M., et al. (2007): Microbial landscapes: new paths to biofilm research. Nature Reviews Microbiology, 5: 76–81.
[49] Caron, D. A., Alexander, H., Allen, A. E., Archibald, J. M., Armbrust, E. V., et al. (2017): Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology, 15: 6–20.
[50] Huang, J., Lam-Gordillo, O., Mosley, L. M., Keneally, C., Brookes, J., et al. (2025): Understanding sediment nutrient cycling in a hypersaline coastal lagoon using hydrogel-based passive sampling techniques. Marine Pollution Bulletin, 214: 117714.
[51] Puppe, D., Ehrmann, O., Kaczorek, D., Wanner, M., Sommer, M. (2015): The protozoic Si pool in temperate forest ecosystems — Quantification, abiotic controls and interactions with earthworms. Geoderma, 243-244: 196–204.
[52] Puppe, D. (2020): Review on protozoic silica and its role in silicon cycling. Geoderma, 365.
[53] Sherr, E. B., Sherr, B. F. (2002): Significance of predation by protists in aquatic microbial food webs. Antonie Van Leeuwenhoek, 81: 293–308.
[54] Field, C. B., Behrenfeld, M. J., Randerson, J. T., Falkowski, P. (1998): Primary production of the biosphere: integrating terrestrial and oceanic components. Science, 281: 237–240.
[55] Falkowski, P., Scholes, R. J., Boyle, E., Canadell, J., Canfield, D., et al. (2000): The global carbon cycle: a test of our knowledge of earth as a system. Science, 290: 291–6.
[56] Armstrong, R. A., Lee, C., Hedges, J. I., Honjo, S., Wakeham, S. G. (2001): A new, mechanistic model for organic carbon fluxes in the ocean based on the quantitative association of POC with ballast minerals. Deep Sea Research Part II: Topical Studies in Oceanography, 49: 219–236.
[57] Cooke, B., Mouradov, A. (2016): Microalgae as bioremediators of polluted ecosystems. Current Biotechnology, 4: 416–425.
[58] Znad, H., Al Ketife, A. M. D., Judd, S., AlMomani, F., Vuthaluru, H. B. (2018): Bioremediation and nutrient removal from wastewater by Chlorella vulgaris. Ecological Engineering, 110: 1–7.
[59] Bonkowski, M. (2004): Protozoa and plant growth: the microbial loop in soil revisited. New Phytologist, 162: 617–631.
[60] Geisen, S., Mitchell, E. A. D., Adl, S., Bonkowski, M., Dunthorn, M., et al. (2018): Soil protists: a fertile frontier in soil biology research. FEMS Microbiology Reviews, 42: 293–323.
[61] Gao, Z., Karlsson, I., Geisen, S., Kowalchuk, G., Jousset, A. (2019): Protists: puppet masters of the rhizosphere microbiome. Trends in Plant Science, 24: 165–176.
[62] Xiong, W., Song, Y., Yang, K., Gu, Y., Wei, Z., et al. (2020): Rhizosphere protists are key determinants of plant health. Microbiome, 8: 27.
[63] Wilkinson, D. M., Mitchell, E. A. D. (2010): Testate Amoebae and nutrient cycling with particular reference to soils. Geomicrobiology Journal, 27: 520–533.
[64] Bonkowski, M., Clarholm, M. (2012): Stimulation of plant growth through interactions of bacteria and protozoa: testing the auxiliary microbial loop hypothesis. Acta Protozoologica, 51: 237–247.
[65] Santoyo, G., Orozco-Mosqueda, M. d. C., Babalola, O. O. (2025): How protists contribute to plant growth and health: Exploring new interactions with the plant microbiome. The Microbe, 7.
[66] Foissner, W. (1999): Soil protozoa as bioindicators: pros and cons, methods, diversity, representative examples. Agriculture, Ecosystems & Environment, 74: 95–112.
[67] Solomon, R., Wein, T., Levy, B., Eshed, S., Dror, R., et al. (2022): Protozoa populations are ecosystem engineers that shape prokaryotic community structure and function of the rumen microbial ecosystem. The ISME Journal, 16: 1187–1197.
[68] Raghukumar, S., Anil, A. C., Khandeparker, L., Patil, J. S. (2000): Thraustochytrid protists as a component of marine microbial films. Marine Biology, 136: 603–609.
[69] Weerman, E. J., Van Der Geest, H. G., Van Der Meulen, M. D., Manders, E. M. M., Van De Koppel, J., et al. (2011): Ciliates as engineers of phototrophic biofilms. Freshwater Biology, 56: 1358–1369.
[70] Acosta, E., Nitsche, F., Dorador, C., Arndt, H. (2024): Protist communities of microbial mats from the extreme environments of five saline Andean lagoons at high altitudes in the Atacama Desert. Frontiers in Microbiology, 15: 1356977.
[71] Azam, F., Fenchel, T., Field, J. G., Gray, J. S., Meyer-Reil, L. A., et al. (1983): The ecological role of water-column microbes in the sea. Marine Ecology Progress Series, 10: 257–263.
[72] Sherr, E. B., Sherr, B. F. (1987): High rates of consumption of bacteria by pelagic ciliates. Nature, 325: 710–711.
[73] Flemming, H. C., Wingender, J. (2010): The biofilm matrix. Nature Reviews Microbiology, 8: 623–33.
[74] de Brouwer, J. F., Wolfstein, K., Ruddy, G. K., Jones, T. E., Stal, L. J. (2005): Biogenic stabilization of intertidal sediments: the importance of extracellular polymeric substances produced by benthic diatoms. Microbial Ecology, 49: 501–12.
[75] Boogert, N. J., Paterson, D. M., Laland, K. N. (2006): The implications of niche construction and ecosystem engineering for conservation biology. BioScience, 56.
[76] Narayan, G. R., Reymond, C. E., Stuhr, M., Doo, S., Schmidt, C., et al. (2021): Response of large benthic foraminifera to climate and local changes: Implications for future carbonate production. Sedimentology, 69: 121–161.
[77] Deldicq, N., Mermillod-Blondin, F., Bouchet, V. M. P. (2023): Sediment reworking of intertidal sediments by the benthic foraminifera Haynesina germanica: the importance of motion behaviour and densities. Proceedings of the Royal Society B, 290: 20230193.
[78] Biard, T. (2022): Diversity and ecology of Radiolaria in modern oceans. Environmental Microbiology, 24: 2179–2200.
[79] Teagle, H., Hawkins, S. J., Moore, P. J., Smale, D. A. (2017): The role of kelp species as biogenic habitat formers in coastal marine ecosystems. Journal of Experimental Marine Biology and Ecology, 492: 81–98.
[80] Adl, M. S., Gupta, V. S. (2006): Protists in soil ecology and forest nutrient cycling. Canadian Journal of Forest Research, 36: 1805–1817.
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